PUBLICATIONS
Publications are sorted by system/species, topic, and method/type. Please visit my Google Scholar page for additional details/metrics.
Oyster Reef / Crassostrea
Hanley, T.C., J.W. White, C.D. Stallings, and D.L. Kimbro. 2019. “Environmental gradients shape the combined effects of multiple parasites on oyster hosts in the northern Gulf of Mexico.” Marine Ecology Progress Series 612:111-125
Hughes, A.R., T.C. Hanley, J.E. Byers, J.H. Grabowski, T. McCrudden, M.F. Piehler, and D.L. Kimbro. 2019. “Genetic diversity and phenotypic variation within hatchery-produced oyster cohorts predict size and success in the field.” Ecological Applications 29:e01940
Hughes, A.R., T.C. Hanley, J.E. Byers, J.H. Grabowski, J.C. Malek, M.F. Piehler, and D.L. Kimbro. 2017. “Genetic by environmental variation but no local adaptation in juvenile oysters (Crassostrea virginica) in the Southeastern U.S.” Ecology and Evolution 7:697-709
Hanley, T.C., A.R. Hughes, B. Williams, H. Garland, and D.L. Kimbro. 2016. “Effects of intraspecific diversity on survivorship, growth, and recruitment of the Eastern oyster across sites.” Ecology 97:1518-1529
Salt Marsh / Spartina & PHRAGMITES
Hanley, T.C., J.L. Bowen, P.J. Kearns, and A.R. Hughes. 2021. “Short- and long-term effects of nutrient enrichment on salt marsh plant production and microbial community structure.” Journal of Ecology 109:3779-3793
Zerebecki, R.A., E.E. Sotka, T.C. Hanley, K.L. Bell, C.A. Gehring, C.C. Nice, C.L. Richards, and A.R. Hughes. 2021. “Repeated genetic divergence across tidal elevation in a foundation plant species.” The American Naturalist 198:E152-E169
Zerebecki, R.A., A.R. Hughes, J. Goff, T.C. Hanley, W. Scheffel, K.L. Heck, Jr. 2021. “Effects of foundation species composition and oil exposure on wetland communities across multiple trophic levels.” Marine Ecology Progress Series 662:53-68
Hughes, A.R., J. Cebrian, K. Heck, J. Goff, T.C. Hanley, W. Scheffel, R.A. Zerebecki. 2018. “Effects of experimental oil exposure, plant species composition, and plant genotypic diversity on salt marsh and mangrove assemblages.” Ecosphere 9:e02207
Schenck, F.R., T.C. Hanley, R.E. Beighley, and A.R. Hughes. 2018. “Phenotypic variation among invasive Phragmites australis populations does not influence salinity tolerance.” Estuaries and Coasts 41:896-907
Hanley, T.C., D.L. Kimbro, and A.R. Hughes. 2017. “Stress and subsidy effects of wrack duration, frequency, and magnitude on salt marsh community structure.” Ecology 98:1884-1895
Hughes, A.R., F.R. Schenck, J. Bloomberg, T.C. Hanley, D. Feng, T.C. Gouhier, R.E. Beighley, and D.L. Kimbro. 2016. “Biogeographic gradients in ecosystem processes of the invasive ecosystem engineer Phragmites australis.” Biological Invasions 18:2577-2595
Hughes, A.R., T.C. Hanley, N.P. Orozco, and R.A. Zerebecki. 2015. “Consumer trait variation influences tritrophic interactions in salt marsh communities.” Ecology and Evolution 5:2659-2672
Seagrass MEADOW / Zostera
von Staats, D.A.*, T.C. Hanley*, C.G. Hays, S.R. Madden, E.E. Sotka, and A.R. Hughes. 2021. “Intra-meadow variation in seagrass flowering phenology across depths.” Estuaries and Coasts 44:325-388 (*co-first author)
Hays, C.G., T.C. Hanley, R.M. Graves, F.R. Schenck, and A.R. Hughes. 2021. “Linking spatial patterns of adult and seed diversity across the depth gradient.” Estuaries and Coasts 44:383-395
Whalen, M.A., R.D.B. Whippo, J.J. Stachowicz, P.H. York, E. Aiello, T. Alcoverro, A.H. Altieri, L. Benedetti-Cecchi, C. Bertolini, M. Bresch, F. Bulleri, P.E. Carnell, S. Cimon, R.M. Connolly, M. Cusson, M.S. Diskin, E. D’Souza, A.A.V. Flores, F.J. Fodrie, A.W.E. Galloway, L.C. Gaskins, O.J. Graham, T.C. Hanley, C.J. Henderson, C.M. Hereu, M. Hessing-Lewis, K.A. Hovel, B.B. Hughes, A.R. Hughes, K.M. Hultgren, H. Jänes, D.S. Janiak, L.N. Johnston, P. Jorgensen, B.P. Kelaher, C. Kruschel, B.S. Lanham, K.-S. Lee, J.S. Lefcheck, E. Lozano-Álvarez, P.I. Macreadie, Z.L. Monteith, N.E. O’Connor, A.D. Olds, J.K. O’Leary, C.J. Patrick, O. Pino, A.G.B. Poore, M.A. Rasheed, W.W. Raymond, K. Reiss, O.K. Rhoades, M.T. Robinson, P.G. Ross, F. Rossi, T.A. Schlacher, J. Seemann, B.R. Silliman, D.L. Smee, M. Thiel, R.K.F. Unsworth, B.I. van Tussenbroek, A. Vergés, M.E. Yeager, B.K. Yednock, S.L. Ziegler, and J.E. Duffy. 2020. “Climate drives the geography of marine consumption by changing predator communities.” Proceedings of the National Academy of Sciences 117: 28160-28166
Reynolds, P.L., J.J. Stachowicz, K. Hovel, C. Boström, K. Boyer, M. Cusson, J.S. Eklof, F.G. Engel, A.H. Engelen, B.K. Eriksson, F.J. Fodrie, J.N. Griffin, C. Hereu, M. Hori, T.C. Hanley, M. Ivanov, P. Jorgensen, C. Kruschel, K.-S. Lee, K. McGlathery, P.O. Moksnes, M. Nakaoka, F.T. Nash, M.I. O’Connor, N. O’Connor, R.J. Orth, F. Rossi, J. Ruesink, E. Sotka, R.K.F. Unsworth, M.A. Whalen, and J.E. Duffy. 2018. “Latitude, temperature and habitat complexity predict predation pressure in eelgrass beds across the Northern Hemisphere.” Ecology 99:29-35
Hughes, A.R., T.C. Hanley, F.R. Schenck, and C.G. Hays. 2016. “Genetic diversity of seagrass seeds influences seedling morphology and biomass.” Ecology 97:3538-3546
Review / Meta-Analysis
Hays, C.G., T.C. Hanley, A.R. Hughes, S.B. Truskey, R.A. Zerebecki, E.E. Sotka. 2021. “Local adaptation in marine foundation species at microgeographic scales.” The Biological Bulletin 241:16-29
Piercey, R.S., P.E. Gribben, T.C. Hanley, A.T. Moles, and A.R. Hughes. 2021. “Incorporating marine macrophytes in plant-soil feedbacks: emerging evidence and opportunities to advance the field.” Journal of Ecology 109:614-625
Hughes, A.R., T.C. Hanley, A.F.P. Moore, C. Ramsay-Newton, R.A. Zerebecki, and E.E. Sotka. 2019. “Predicting the sensitivity of marine populations to rising temperatures.” Frontiers in Ecology and the Environment 17:17-24
Matthews, B., A. Narwani, S. Hausch, E. Nonaka, H. Peter, M. Yamamichi, K.E. Sullam, K.C. Bird, M.K. Thomas, T.C. Hanley, and C.B. Turner. 2011. “Toward an integration of evolutionary biology and ecosystem science.” Ecology Letters 14:690-701
Books / Book Chapters
Hanley, T.C. and K.J. La Pierre (eds). 2015. Trophic Ecology: Bottom-Up and Top-Down Interactions across Aquatic and Terrestrial Systems. Cambridge University Press, Cambridge.
La Pierre, K.J. and T.C. Hanley. 2015. “Bottom-up and top-down interactions across ecosystems in an era of global change.” Trophic Ecology: Bottom-Up and Top-Down Interactions across Aquatic and Terrestrial Systems (eds T.C. Hanley and K.J. La Pierre). Cambridge University Press, Cambridge.
Diversity, Equity, and Inclusion
Davies, S.W., H.M. Putnam, T. Ainsworth, J.K. Baum, C.B. Bove, S.C. Crosby, I.M. Côté, A. Duplouy, R.W. Fulweiler, A.J. Griffin, T.C. Hanley, T. Hill, A. Humanes, S. Mangubhai, A. Metaxas, L.M. Parker, H.E. Rivera, N.J. Silbiger, N.S. Smith, A.K. Spaulding, N. Traylor-Knowles, B.L. Weigel, R.M. Wright, and A.E. Bates. 2021. “Promoting inclusive metrics of success and impact to dismantle a discriminatory reward system in science.” PLOS Biology 19:e3001282
Fulweiler, R.W., S.W. Davies, J.F. Biddle, A.J. Burgin, E.H.G. Cooperdock, T.C. Hanley, C. Kenkel, A.M. Marcarelli, C.M. Matassa, L.Z. Santiago-Vazquez, N. Traylor-Knowles, and M. Ziegler. 2021. “Rebuild the Academy: Supporting academic mothers during COVID-19 and beyond.” PLOS Biology 19:e3001100
FRESHWATER / Daphnia
DeLong, J.P, T.C. Hanley, J.P. Gibert, L.M. Puth, and D.M. Post. 2018. “Life history traits and functional processes generate multiple pathways to ecological stability.” Ecology 99:5-12
DeLong, J.P., T.C. Hanley, and D.A. Vasseur. 2014. “Predator-prey dynamics and the plasticity of predator body size.” Functional Ecology 28:487-493
DeLong, J.P., T.C. Hanley, and D.A. Vasseur. 2014. “Competition and the density dependence of metabolic rates.” Journal of Animal Ecology 83:51-58
DeLong, J.P. and T.C. Hanley. 2013. “The rate-size trade-off structures intraspecific variation in Daphnia ambigua life history parameters.” PLoS ONE 8:e81024
Walsh, M.R., J.P. DeLong, T.C. Hanley, D.M. Post. 2012. “A cascade of evolutionary change alters consumer-resource dynamics and ecosystem function.” Proceedings of the Royal Society B: Biological Sciences 279:3184–3192
Galapagos / Amblyrhynchus
Steinfartz, S., S. Glaberman, D. Lanterbecq, M.A. Russello, S. Rosa, T.C. Hanley, C. Marquez, H.L. Snell, H.M. Snell, G. Gentile, G. Dell’Olmo, A.M. Powell, and A. Caccone. 2009. “Progressive colonization and restricted gene flow shape island-dependent population structure in Galápagos marine iguanas (Amblyrhynchus cristatus).” BMC Evolutionary Biology 9:297-314
Hanley, T.C. and A. Caccone. 2005. “Development of primers for the characterization of the mitochondrial control region of Galápagos land and marine iguanas (Conolophus and Amblyrhynchus).” Molecular Ecology Notes 5:599-601.